tumourkit.eval_pipe.run_preprocessing

tumourkit.eval_pipe.run_preprocessing(args: Namespace, logger: Logger) → None

Runs the preprocessing steps to convert the gson format to other formats.

Parameters:

• args (Namespace) – The arguments for the preprocessing.

• logger (Logger) – The logger object used for logging messages.

Raises:

HovernetNotFoundError – If the Hovernet centroids are not found in the training output.