tumourkit.preprocessing

tumourkit.preprocessing.centroids2png	Creates images with pixel value 255 at the centroids coordinates.
tumourkit.preprocessing.centroidspng2csv	Merges .centroids.csv and .GT_cells.png into .class.csv files.
tumourkit.preprocessing.geojson2pngcsv	Converts QuPath geojson format into our png <-> csv format.
tumourkit.preprocessing.graph2centroids	Converts the .nodes.csv files into .centroids.csv files.
tumourkit.preprocessing.hovernet2centroids	Script to parse the json format of the centroids of Hovernet into a CSV format with columns X,Y,class The class output format is 0=non-tumour, 1=tumour.
tumourkit.preprocessing.hovernet2geojson	Converts from HoVernet json to QuPath geojson.
tumourkit.preprocessing.png2graph	Computes a graph representation from the images and pngcsv labels.
tumourkit.preprocessing.pngcsv2centroids	Computes centroids csv from png <-> csv labels.
tumourkit.preprocessing.pngcsv2geojson	Converts our png <-> csv format into QuPath geojson format.
tumourkit.preprocessing.pngcsv2graph	Computes a graph representation from the images and pngcsv labels.
tumourkit.preprocessing.remove_uncertain	Removes cells with label uncertain from the annotations.