tumourkit.postprocessing

tumourkit.postprocessing.compare_barcodes	Computes q-Wassertein distance and bottleneck distance of persistence diagrams.
tumourkit.postprocessing.draw_barcode	Draws the persistence diagram of the cells.
tumourkit.postprocessing.draw_cells	Draws the cells into an image.
tumourkit.postprocessing.draw_graph	Draws the graph into an image.
tumourkit.postprocessing.draw_rips	Draws Vietoris-Rips complexes over the images.
tumourkit.postprocessing.extract_tensorboard	Script to retrieve the data from tensorboard logs.
tumourkit.postprocessing.join_graph_gt	Given .nodes.csv prediction files and .centroids.csv GT files, replaces target value of .nodes.csv with GT ones.
tumourkit.postprocessing.join_hovprob_graph	Extract HoVer-Net probabilities from json and concatenates the result as new column (prob1) to .nodes.csv.
tumourkit.postprocessing.merge_cells	Merge broken cells using a morphological algorithm to detect touching frontiers.
tumourkit.postprocessing.plot_logs	Script to visualize the result from extract_tensorboard.
tumourkit.postprocessing.rswoosh	Copyright (C) 2023 Jose Pérez Cano
tumourkit.postprocessing.summarize_logs	Script to read the tensorboard logs and extract the last ten validation points of each configuration to select the best.