tumourkit.infer_pipe

Pipeline for inference.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.

Contact information: joseperez2000@hotmail.es

Functions

`main`
`run_graphs`	Runs the graph inference.
`run_hovernet`	Runs the Hovernet inference.
`run_postgraphs`	Performs post-processing steps on GNN output.
`run_posthov`	Performs post-processing steps on Hovernet output.
`set_best_configuration`	Sets the best configuration from training based on the F1 score.