tumourkit.research_pipe.run_scaling

tumourkit.research_pipe.run_scaling(args: Namespace, logger: Logger) → None

Runs the scaling experiment for Hovernet.

This function performs the following steps:

  1. Trains Hovernet models with different shapes: ‘270’, ‘270FT’, ‘518’, ‘518FT’.

  2. Performs inference with the trained models on the input data.

  3. Runs post-processing on the Hovernet output.

  4. Evaluates the Hovernet output using the ground truth data.

Parameters:

  • args (Namespace) – The arguments for the scaling experiment.

  • logger (Logger) – The logger object used for logging messages.