tumourkit.segmentation.hovernet.metrics.stats_utils

Functions

get_dice_1	Traditional dice.
get_dice_2	Ensemble Dice as used in Computational Precision Medicine Challenge.
get_fast_aji	AJI version distributed by MoNuSeg, has no permutation problem but suffered from over-penalisation similar to DICE2.
get_fast_aji_plus	AJI+, an AJI version with maximal unique pairing to obtain overall intersecion.
get_fast_dice_2	Ensemble dice.
get_fast_pq	match_iou is the IoU threshold level to determine the pairing between GT instances p and prediction instances g.
pair_coordinates	Use the Munkres or Kuhn-Munkres algorithm to find the most optimal unique pairing (largest possible match) when pairing points in set B against points in set A, using distance as cost function.
remap_label	Rename all instance id so that the id is contiguous i.e [0, 1, 2, 3] not [0, 2, 4, 6].