tumourkit.segmentation.hovernet.run_infer.wsi_cli

tumourkit.segmentation.hovernet.run_infer.wsi_cli = "\nArguments for processing wsi\n\nusage:\n    wsi (--input_dir=<path>) (--output_dir=<path>) [--proc_mag=<n>]        [--cache_path=<path>] [--input_mask_dir=<path>]         [--ambiguous_size=<n>] [--chunk_shape=<n>] [--tile_shape=<n>]         [--save_thumb] [--save_mask]\n    \noptions:\n    --input_dir=<path>      Path to input data directory. Assumes the files are not nested within directory.\n    --output_dir=<path>     Path to output directory.\n    --cache_path=<path>     Path for cache. Should be placed on SSD with at least 100GB. [default: cache]\n    --mask_dir=<path>       Path to directory containing tissue masks. \n                            Should have the same name as corresponding WSIs. [default: '']\n\n    --proc_mag=<n>          Magnification level (objective power) used for WSI processing. [default: 40]\n    --ambiguous_size=<int>  Define ambiguous region along tiling grid to perform re-post processing. [default: 128]\n    --chunk_shape=<n>       Shape of chunk for processing. [default: 10000]\n    --tile_shape=<n>        Shape of tiles for processing. [default: 2048]\n    --save_thumb            To save thumb. [default: False]\n    --save_mask             To save mask. [default: False]\n"

Copyright (C) 2023 Jose Pérez Cano

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Contact information: joseperez2000@hotmail.es