tumourkit.train_pipe.run_hov_pipe

tumourkit.train_pipe.run_hov_pipe(args: Namespace, logger: Logger) → None

Trains Hovernet and predicts cell contours in json format.

This function performs the following steps:

  1. Trains Hovernet on the training data.

  2. Performs inference using the trained Hovernet model on the input images.

  3. Saves the predicted cell contours in json format.

Parameters:

  • args (Namespace) – The arguments for the Hovernet pipeline.

  • logger (Logger) – The logger object used for logging messages.