tumourkit.utils.postprocessing

Module with utility functions for postprocessing.

Copyright (C) 2023 Jose Pérez Cano

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.

Contact information: joseperez2000@hotmail.es

Functions

check_order

THIS FUNCTION IS NOT IMPLEMENTED YET.

create_comparator

Returns a comparator function between two contours.

get_greatest_connected_component

Given a list of indices, returns the left and right value of the greatest connected component.

join

Joins two cells by appending all the points in b's contour to a's contour.

merge_cells

Merges two cells by removing their 30 closest pairs and connecting the endpoints.

remove_idx

Removes all the indices in a's contour that are included in a_idx's greatest connected component.