tumourkit.preprocessing.hovernet2centroids

Script to parse the json format of the centroids of Hovernet into a CSV format with columns X,Y,class The class output format is 0=non-tumour, 1=tumour.

Copyright (C) 2023 Jose Pérez Cano

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.

Contact information: joseperez2000@hotmail.es

Functions

main

main_with_args

parse_centroids

Extracts centroids from a HoverNet JSON dictionary and returns them as a list of (X,Y,class) tuples.