tumourkit.postprocessing.compare_barcodes

Computes q-Wassertein distance and bottleneck distance of persistence diagrams. Input format: CSV (births and deaths) Output format: TXT

Copyright (C) 2025 Jose Pérez Cano

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.

Contact information: joseperez2000@hotmail.es

Functions

compute_wasserstein_distance	Computes the q-Wasserstein distance between two persistence diagrams.
main
main_with_args	Main processing function to compute Wasserstein distance from two barcode CSV files.
read_diagram_from_csv	Reads a persistence diagram from a CSV file and filters by homology dimension.