tumourkit.postprocessing.merge_cells

Merge broken cells using a morphological algorithm to detect touching frontiers.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.

Contact information: joseperez2000@hotmail.es

Functions

`create_id_map`	Creates an index mapping function and its inverse mapping based on a unique difference per pair.
`get_gradient`	"
`main`
`merge_cells`	Merges cells in a binary image based on the shared frontier length.
`remove_lost_ids`	Removes identifiers in csv that are not present in the png.