tumourkit.postprocessing.join_hovprob_graph

Extract HoVer-Net probabilities from json and concatenates the result as new column (prob1) to .nodes.csv.

Copyright (C) 2023 Jose Pérez Cano

This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.

Contact information: joseperez2000@hotmail.es

Functions

add_probability	Adds probability information from the Hovernet JSON nuclei dictionary to the graph DataFrame.
main
main_with_args
parse_centroids_probs	Parses the centroids and probabilities from the Hovernet JSON nuclei dictionary.